Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs12596045 chr16:976003 A/G 0.000107 285 26.63 26.37 14.83 KM Plot
KIRP rs12596206 chr16:90022738 C/T 2.09E-8 281 24.67 34.82 5.95 KM Plot
KIRP rs12596583 chr16:90029105 G/C 5.38E-5 286 24.8 38.05 10.23 KM Plot
KIRP rs12597566 chr16:966051 A/C 0.0001 284 26.83 26.77 15.53 KM Plot
KIRP rs12598556 chr16:90089906 G/A 1.61E-7 287 24.67 34.67 10.7 KM Plot
KIRP rs12599641 chr16:961967 T/C 1.57E-5 276 26.57 24.42 14.83 KM Plot
KIRP rs12602120 chr17:10220048 C/A 4.28E-8 285 25.63 30.7 16.13 KM Plot
KIRP rs12616085 chr2:70415510 C/T 1.88E-6 284 25.23 30.95 10.83 KM Plot
KIRP rs12635045 chr3:154030689 T/A 0.000149 280 25.63 28.57 18.27 KM Plot
KIRP rs12691517 chr1:89513250 C/T 9.27E-6 284 19.27 31 26.77 KM Plot
KIRP rs12691518 chr1:89513262 C/G 7.57E-5 284 18.9 34.48 26.57 KM Plot
KIRP rs12695447 chr3:124577077 T/G 5.02E-5 286 25.93 26.63 16.53 KM Plot
KIRP rs12712075 chr2:100924129 T/C 0.000172 285 26.92 25.7 25.15 KM Plot
KIRP rs12750145 chr1:232020086 G/A 0.00013 282 26.37 24.67 22.27 KM Plot
KIRP rs12781862 chr10:88208203 G/C 5.63E-8 286 26.38 22.57 9.77 KM Plot